Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs71115955 chr14:74559018 GT/G 2.24E-5 176 25.4 27.43 10.3 KM Plot
PCPG rs71115960 chr14:74586010 GC/G 4.4E-7 177 25.4 27.78 7.4 KM Plot
PCPG rs71139192 chr17:65776315 AT/ATT 0.000445 173 25.2 31.9 8.22 KM Plot
PCPG rs71150407 chr3:125556658 CCTTTCTCCTCACCT/C 0.000379 173 25.53 31.9 6.1 KM Plot
PCPG rs7116655 chr11:103963380 G/C 5.71E-11 176 25.87 18.57 10.3 KM Plot
PCPG rs71207989 chr2:24343147 A/ACAAC 3.22E-6 176 25.53 26.57 17.43 KM Plot
PCPG rs7127084 chr11:1533682 C/T 0.000149 178 25.28 25.43 15.22 KM Plot
PCPG rs71297105 chr7:89857725 A/AAAC 3.1E-5 177 25.77 24.53 6.15 KM Plot
PCPG rs71299622 chr3:52917038 G/A 8.4E-6 174 25.4 26.05 10.3 KM Plot
PCPG rs71301808 chr3:53085577 C/G 0.000137 175 25.08 26.92 10.3 KM Plot
PCPG rs71301809 chr3:53090312 C/T 7.36E-6 174 25.08 30.87 11.78 KM Plot
PCPG rs71301811 chr3:53099334 T/C 7.12E-6 176 25.08 26.92 11.78 KM Plot
PCPG rs71301814 chr3:53117663 G/A 7.77E-6 176 25.28 26.05 11.78 KM Plot
PCPG rs71305806 chr14:74391386 C/CT 1.35E-5 174 25.4 27.2 10.43 KM Plot
PCPG rs71310118 chr2:24336825 G/GCTGA 0.000114 177 25.28 27.27 17.43 KM Plot